vcylarim_roi

The vcylarim_roi program is designed to plot layer-specific activations within a defined Region of Interest (ROI), providing an alternative analysis pipeline. Its output is a text file, with each row corresponding to a specific bin. For each bin, the file details four key metrics: cortical depth, the mean activation, the standard deviation of activation, and the total number of voxels included. Input file formats can be either nifti (.nii) or vista (.v).

Example:

vcylarim_roi -in zmap.v -roi roi.nii -metric metric.v -nbins 15 -out list.txt

Parameters of ‘vcylarim_roi’

-help

Prints usage information.

-in

Input zmap file.

-out

Output txt file.

-metric

Image containing the normalized cortical depths.

-roi

Region of interest. Required.

-nbins

Number of bins. Default: 5